Wilson Disease / Hepatolenticular Degeneration via the ATP7B Gene
Summary and Pricing
Test Method
Sequencing and CNV Detection via NextGen Sequencing using PG-Select Capture ProbesTest Code | Test Copy Genes | Test CPT Code | Gene CPT Codes Copy CPT Code | Base Price | |
---|---|---|---|---|---|
7871 | ATP7B | 81406 | 81406,81479 | $990 | Order Options and Pricing |
Pricing Comments
Testing run on PG-select capture probes includes CNV analysis for the gene(s) on the panel but does not permit the optional add on of exome-wide CNV analysis. Any of the NGS platforms allow reflex to other clinically relevant genes, up to whole exome or whole genome sequencing depending upon the base platform selected for the initial test.
An additional 25% charge will be applied to STAT orders. STAT orders are prioritized throughout the testing process.
This test is also offered via a custom panel (click here) on our exome or genome backbone which permits the optional add on of exome-wide CNV or genome-wide SV analysis.
Turnaround Time
3 weeks on average for standard orders or 2 weeks on average for STAT orders.
Please note: Once the testing process begins, an Estimated Report Date (ERD) range will be displayed in the portal. This is the most accurate prediction of when your report will be complete and may differ from the average TAT published on our website. About 85% of our tests will be reported within or before the ERD range. We will notify you of significant delays or holds which will impact the ERD. Learn more about turnaround times here.
Targeted Testing
For ordering sequencing of targeted known variants, go to our Targeted Variants page.
Clinical Features and Genetics
Clinical Features
Wilson disease (WD, OMIM 277900), also called hepatolenticular degeneration, is a disorder of copper metabolism. WD results from the toxic accumulation of copper, mainly in the liver, brain, kidneys, and eyes. WD is characterized by an extensive clinical variability between individuals with regards to age of onset, severity, and clinical presentation. The hallmarks of WD include a gold-brown ring (Kayser-Fleischer ring) around the edge of the iris and in the rim of the cornea, reduced serum levels of ceruloplasmin, and elevated urinary copper excretion. Depending on which organ systems are affected, symptoms may also include jaundice, enlargement of the liver or spleen, fatigue, seizures, slurred speech, difficulty swallowing, tremor, dystonia, personality changes, depression, and psychosis. Age of onset varies between three and seventy years of age. WD occurs worldwide, with an estimated incidence between 1:30,000 and 1:100,000 (Ala et al. Lancet 369:397-408, 2007; de Bie et al. J Med Genet 44:673-688, 2007). It is, however, most common in the Sardinian population.
Genetics
Wilson Disease (WD) is inherited with an autosomal recessive manner and results from variants in the ATP7B gene (Bull et al. Nat Genet 5:327-337, 1993; Tanzi et al. Nat Genet 5:344-350, 1993). Over 500 variants have been detected in patients with WD, most of which are missense/nonsense, small insertions/deletions and splicing. Gross insertions, deletions and complex rearrangements are rare. Although most WD-causing variants are found only in single families, three variants are prevalent. These are the H1069Q substitution in European and North American populations, the R778L substitution in Southeast Asia (Ferenci Hum Genet 120:151-159, 2006), and a 15-bp deletion in the gene promoter in the Sardinian population (Loudianos et al. Hum Mutat 14:294-303, 1999). The ATP7B gene encodes an ATPase which participates in the transport of copper ions across membranes.
Clinical Sensitivity - Sequencing with CNV PG-Select
This test detects variants in about 98% of individuals with WD (Cox and Roberts, GeneReviews, 2006).
Testing Strategy
This test provides full coverage of all coding exons of the ATP7B gene, plus ~10 bases of flanking noncoding DNA. We define full coverage as >20X NGS reads or Sanger sequencing.
Indications for Test
Patients with WD, their siblings and children, and symptomatic relatives are candidates for this test. This test may also be considered for the reproductive partners of individuals who carry pathogenic variants in ATP7B.
Patients with WD, their siblings and children, and symptomatic relatives are candidates for this test. This test may also be considered for the reproductive partners of individuals who carry pathogenic variants in ATP7B.
Gene
Official Gene Symbol | OMIM ID |
---|---|
ATP7B | 606882 |
Inheritance | Abbreviation |
---|---|
Autosomal Dominant | AD |
Autosomal Recessive | AR |
X-Linked | XL |
Mitochondrial | MT |
Disease
Name | Inheritance | OMIM ID |
---|---|---|
Wilson's Disease | AR | 277900 |
Citations
- Ala, A., et.al. (2007). PubMed ID: 17276780
- Bull, P. C., et.al. (1993). PubMed ID: 8298639
- de Bie, P., et.al. (2007). PubMed ID: 17717039
- Diane W Cox, Eve Roberts (2006). "Wilson Disease." PubMed ID: 20301685
- Ferenci, P. (2006). PubMed ID: 16791614
- Loudianos, G., et.al. (1999). PubMed ID: 10502776
- Tanzi, R. E., et.al. (1993). PubMed ID: 8298641
Ordering/Specimens
Ordering Options
We offer several options when ordering sequencing tests. For more information on these options, see our Ordering Instructions page. To view available options, click on the Order Options button within the test description.
myPrevent - Online Ordering
- The test can be added to your online orders in the Summary and Pricing section.
- Once the test has been added log in to myPrevent to fill out an online requisition form.
- PGnome sequencing panels can be ordered via the myPrevent portal only at this time.
Requisition Form
- A completed requisition form must accompany all specimens.
- Billing information along with specimen and shipping instructions are within the requisition form.
- All testing must be ordered by a qualified healthcare provider.
For Requisition Forms, visit our Forms page
If ordering a Duo or Trio test, the proband and all comparator samples are required to initiate testing. If we do not receive all required samples for the test ordered within 21 days, we will convert the order to the most effective testing strategy with the samples available. Prior authorization and/or billing in place may be impacted by a change in test code.
Specimen Types
ORDER OPTIONS
View Ordering Instructions1) Select Test Type
2) Select Additional Test Options
No Additional Test Options are available for this test.