Tenorio Syndrome via the RNF125 Gene
Summary and Pricing
Test Method
Exome Sequencing with CNV DetectionTest Code | Test Copy Genes | Test CPT Code | Gene CPT Codes Copy CPT Code | Base Price | |
---|---|---|---|---|---|
8501 | RNF125 | 81479 | 81479,81479 | $990 | Order Options and Pricing |
Pricing Comments
Our favored testing approach is exome based NextGen sequencing with CNV analysis. This will allow cost effective reflexing to PGxome or other exome based tests. However, if full gene Sanger sequencing is desired for STAT turnaround time, insurance, or other reasons, please see link below for Test Code, pricing, and turnaround time information.
An additional 25% charge will be applied to STAT orders. STAT orders are prioritized throughout the testing process.
Click here for costs to reflex to whole PGxome (if original test is on PGxome Sequencing platform).
Click here for costs to reflex to whole PGnome (if original test is on PGnome Sequencing platform).
The Sanger Sequencing method for this test is NY State approved.
For Sanger Sequencing click here.Turnaround Time
3 weeks on average for standard orders or 2 weeks on average for STAT orders.
Please note: Once the testing process begins, an Estimated Report Date (ERD) range will be displayed in the portal. This is the most accurate prediction of when your report will be complete and may differ from the average TAT published on our website. About 85% of our tests will be reported within or before the ERD range. We will notify you of significant delays or holds which will impact the ERD. Learn more about turnaround times here.
Targeted Testing
For ordering sequencing of targeted known variants, go to our Targeted Variants page.
Clinical Features and Genetics
Clinical Features
Tenorio syndrome, known as overgrowth, macrocephaly and intellectual disability syndrome, is one genetic cause of a group of overgrowth syndromes in which all parameters of growth and physical development are above the mean for age and sex. Major features include overgrowth, macrocephaly, intellectual disability, hypotonia, seizures and psychomotor impairment. Patients also present abnormality in skin, skeletal, cardiovascular and immune systems. Laboratory findings are hypoglycemia and hypoinsulinemia. MRI reveals structural brain abnormalities including cortical atrophy and ventricular asymmetry (Tenorio et al. 2014. PubMed ID: 25196541).
Genetics
Tenorio syndrome is inherited in an autosomal dominant manner and is caused by pathogenic variants in the RNF125 gene, which encodes RING finger protein 125. RNF125 is a RING finger E3 ubiquitin ligase with a RING domain, three zinc fingers and a ubiquitin interacting motif. RNF125 is an important ligase in cell ubiquitination which regulates almost every cellular process either through the destruction of target proteins or the spatial or temporal alteration of their functions. A study demonstrated that loss of function of RNF125 leads to dysregulation of the RIG-I-IPS1, PI3K-AKT, and interferon pathways, however, the exact pathogenic mechanism is unclear (Bijlmakers et al. 2016. PubMed ID: 27411375; Tenorio et al. 2014. PubMed ID: 25196541).
Reported pathogenic point variants in RNF125 are only missense. One large deletion involving the RNF125 locus has also been reported in Tenorio syndrome (Human Gene Mutation Database).
Clinical Sensitivity - Sequencing with CNV PGxome
In study of overgrowth syndrome, 4 out of 270 families were found to have a pathogenic variant in RNF125 (Tenorio et al. 2014. PubMed ID: 25196541).
Testing Strategy
This test provides full coverage of all coding exons of the RNF125 gene plus 10 bases of flanking noncoding DNA in all available transcripts along with other non-coding regions in which pathogenic variants have been identified at PreventionGenetics or reported elsewhere. We define full coverage as >20X NGS reads or Sanger sequencing. PGnome panels typically provide slightly increased coverage over the PGxome equivalent. PGnome sequencing panels have the added benefit of additional analysis and reporting of deep intronic regions (where applicable).
Dependent on the sequencing backbone selected for this testing, discounted reflex testing to any other similar backbone-based test is available (i.e., PGxome panel to whole PGxome; PGnome panel to whole PGnome).
Indications for Test
The test is recommended for patients suspected to have Tenorio syndrome.
The test is recommended for patients suspected to have Tenorio syndrome.
Gene
Official Gene Symbol | OMIM ID |
---|---|
RNF125 | 610432 |
Inheritance | Abbreviation |
---|---|
Autosomal Dominant | AD |
Autosomal Recessive | AR |
X-Linked | XL |
Mitochondrial | MT |
Disease
Name | Inheritance | OMIM ID |
---|---|---|
Tenorio Syndrome | AD | 616260 |
Citations
Ordering/Specimens
Ordering Options
We offer several options when ordering sequencing tests. For more information on these options, see our Ordering Instructions page. To view available options, click on the Order Options button within the test description.
myPrevent - Online Ordering
- The test can be added to your online orders in the Summary and Pricing section.
- Once the test has been added log in to myPrevent to fill out an online requisition form.
- PGnome sequencing panels can be ordered via the myPrevent portal only at this time.
Requisition Form
- A completed requisition form must accompany all specimens.
- Billing information along with specimen and shipping instructions are within the requisition form.
- All testing must be ordered by a qualified healthcare provider.
For Requisition Forms, visit our Forms page
If ordering a Duo or Trio test, the proband and all comparator samples are required to initiate testing. If we do not receive all required samples for the test ordered within 21 days, we will convert the order to the most effective testing strategy with the samples available. Prior authorization and/or billing in place may be impacted by a change in test code.
Specimen Types
Specimen Requirements and Shipping Details
PGxome (Exome) Sequencing Panel
PGnome (Genome) Sequencing Panel
ORDER OPTIONS
View Ordering Instructions1) Select Test Type
2) Select Additional Test Options
No Additional Test Options are available for this test.