Autosomal Recessive DOPA-Responsive Dystonia via the TH Gene
Summary and Pricing
Test Method
Sequencing and CNV Detection via NextGen Sequencing using PG-Select Capture ProbesTest Code | Test Copy Genes | Test CPT Code | Gene CPT Codes Copy CPT Code | Base Price | |
---|---|---|---|---|---|
7845 | TH | 81406 | 81406,81479 | $990 | Order Options and Pricing |
Pricing Comments
Testing run on PG-select capture probes includes CNV analysis for the gene(s) on the panel but does not permit the optional add on of exome-wide CNV analysis. Any of the NGS platforms allow reflex to other clinically relevant genes, up to whole exome or whole genome sequencing depending upon the base platform selected for the initial test.
An additional 25% charge will be applied to STAT orders. STAT orders are prioritized throughout the testing process.
This test is also offered via a custom panel (click here) on our exome or genome backbone which permits the optional add on of exome-wide CNV or genome-wide SV analysis.
Turnaround Time
3 weeks on average for standard orders or 2 weeks on average for STAT orders.
Please note: Once the testing process begins, an Estimated Report Date (ERD) range will be displayed in the portal. This is the most accurate prediction of when your report will be complete and may differ from the average TAT published on our website. About 85% of our tests will be reported within or before the ERD range. We will notify you of significant delays or holds which will impact the ERD. Learn more about turnaround times here.
Targeted Testing
For ordering sequencing of targeted known variants, go to our Targeted Variants page.
Clinical Features and Genetics
Clinical Features
Autosomal recessive Dopa-responsive dystonia (AR-DRD) is a rare progressive neurometabolic disorder. It is heterogeneous in regard to the age of onset, clinical features, progression rate, and response to levodopa therapy. Clinical features include limb dystonia, hypokinesia, bradykinesia, truncal hypotonia, tremor, myoclonus, rigidity of extremities, walking difficulties, oculogyric crises, inexpressive faces, ptosis, autonomic disturbances, lethargy-irritability crises, sleep disturbances, and psychomotor developmental delay. AR-DRD is usually more severe and more complex than autosomal dominant DRD. Two forms of the disease can be distinguished.
1. TH-deficient dopa-responsive dystonia is characterized by onset in infancy, usually during the first year of life, and diurnal fluctuation. Symptoms are mild in the mornings and exacerbate during the day. Patients with TH-deficient dopa-responsive dystonia are successfully treated with low-doses of L-DOPA in combination with a decarboxylase inhibitor. Patients are usually able to conduct a normal life (Schiller et al. 2004).
2. Infantile Parkinsonism is characterized by an earlier onset, usually during the first six months of life, and more rapid progression. Additional distinguishing symptoms include complicated perinatal history, seizures and developmental motor delay. Response to L-DOPA therapy is less effective and was absent in about one third of treated patients (Willemsen et al. 2010; Sun et al. 2014).
In addition to these two phenotypes, various intermediary phenotypes with overlapping features have been described (Hoffmann et al. 2003; Furukawa et al. 2004).
Autosomal recessive DRD is less common than the dominant form of DRD. About 50 families have been reported worldwide (Verbeek et al. 2007; Clot et al. 2009; Willemsen et al. 2010).
Genetics
Autosomal recessive DRD is genetically heterozygous. Two genes have been implicated in the disease: TH and SPR (Lüdecke et al. 1995; Bonafe et al. 2001).
To date, about 60 different pathogenic variants in the TH gene have been reported. Most variants are missense. However, several truncating variants, including splice site variants and small frameshift deletions were also reported. Large pathogenic deletions appear to be rare. Only one such deletion has been reported (Ormazabal et al. 2011). Several variants in the promoter region have been documented to be pathogenic (Ribasés et al. 2007; Verbeek et al. 2007). Although heterozygous carriers are usually asymptomatic, exercise-induced stiffness has been reported in heterozygous family members (Furukawa et al. 2001).
Pathogenic variants in the TH gene have been reported in patients with AR-DRD from various geographic and ethnic origins (Verbeek et al. 2007; Willemsen et al. 2010; Al-Muslamani et al. 2014).
The TH gene encodes the tyrosine hydroxylase enzyme, a rate-limiting enzyme in the biosynthesis of catecholamines, including dopamine. It is expressed mainly in the brain and adrenal medulla.
Pathogenic variants in the TH gene have been documented to result in reduced levels of the tyrosine hydroxylase enzyme, which lead to low levels of cerebral L-DOPA (Lüdecke et al. 1995).
Clinical Sensitivity - Sequencing with CNV PG-Select
This test will detect pathogenic variants in the TH gene in about 5% of patients with a clinical diagnosis of dystonia and marked and sustained response to levodopa treatment (Clot et al. 2009).
To date, only one large pathogenic deletion was reported in one patient (Ormazabal et al. 2011).
Testing Strategy
This test provides full coverage of all coding exons of the TH gene, plus ~10 bases of flanking noncoding DNA. We define full coverage as >20X NGS reads or Sanger sequencing.
Indications for Test
Patients with infantile and childhood onset dystonia with a positive response to L-DOPA and no pathogenic variants in the GCH1 gene are candidates for this test.
Patients with atypical dystonia phenotypes and no pathogenic variants in the remaining genes associated with dystonia are also candidates (Sun et al. 2014).
This test may also be considered for the reproductive partners of individuals who carry pathogenic variants in TH.
Patients with infantile and childhood onset dystonia with a positive response to L-DOPA and no pathogenic variants in the GCH1 gene are candidates for this test.
Patients with atypical dystonia phenotypes and no pathogenic variants in the remaining genes associated with dystonia are also candidates (Sun et al. 2014).
This test may also be considered for the reproductive partners of individuals who carry pathogenic variants in TH.
Gene
Official Gene Symbol | OMIM ID |
---|---|
TH | 191290 |
Inheritance | Abbreviation |
---|---|
Autosomal Dominant | AD |
Autosomal Recessive | AR |
X-Linked | XL |
Mitochondrial | MT |
Disease
Name | Inheritance | OMIM ID |
---|---|---|
Tyrosine Hydroxylase Deficiency | AR | 605407 |
Citations
- Al-Muslamani A.M. et al. 2014. Sultan Qaboos University Medical Journal. 14: e397-400. PubMed ID: 25097778
- Bonafé L. et al. 2001. American Journal of Human Genetics. 69: 269-77. PubMed ID: 11443547
- Clot F. et al. 2009. Brain. 132: 1753-63. PubMed ID: 19491146
- Furukawa Y. et al. 2001. Neurology. 56: 260-3. PubMed ID: 11160968
- Furukawa Y. et al. 2004. Annals of Neurology. 55: 147-8. PubMed ID: 14705130
- Hoffmann G.F. et al. 2003. Annals of Neurology. 54 Suppl 6: S56-65. PubMed ID: 12891655
- Lüdecke B. et al. 1995. Human Genetics. 95: 123-5. PubMed ID: 7814018
- Ormazabal A. et al. 2011. Movement Disorders. 26: 1558-60. PubMed ID: 21465550
- Ribasés M. et al. 2007. Molecular Genetics and Metabolism. 92: 274-7. PubMed ID: 17698383
- Schiller A. et al. 2004. Neurology. 63: 1524-6. PubMed ID: 15505183
- Sun Z.F. et al. 2014. Plos One. 9: e106388. PubMed ID: 25181484
- Verbeek M.M. et al. 2007. Annals of Neurology. 62: 422-6. PubMed ID: 17696123
- Willemsen M.A. et al. 2010. Brain. 133: 1810-22. PubMed ID: 20430833
Ordering/Specimens
Ordering Options
We offer several options when ordering sequencing tests. For more information on these options, see our Ordering Instructions page. To view available options, click on the Order Options button within the test description.
myPrevent - Online Ordering
- The test can be added to your online orders in the Summary and Pricing section.
- Once the test has been added log in to myPrevent to fill out an online requisition form.
- PGnome sequencing panels can be ordered via the myPrevent portal only at this time.
Requisition Form
- A completed requisition form must accompany all specimens.
- Billing information along with specimen and shipping instructions are within the requisition form.
- All testing must be ordered by a qualified healthcare provider.
For Requisition Forms, visit our Forms page
If ordering a Duo or Trio test, the proband and all comparator samples are required to initiate testing. If we do not receive all required samples for the test ordered within 21 days, we will convert the order to the most effective testing strategy with the samples available. Prior authorization and/or billing in place may be impacted by a change in test code.
Specimen Types
ORDER OPTIONS
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2) Select Additional Test Options
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