Familial Mediterranean Fever (Renal Amyloidosis) via the MEFV Gene
Summary and Pricing
Test Method
Sequencing and CNV Detection via NextGen Sequencing using PG-Select Capture ProbesTest Code | Test Copy Genes | Test CPT Code | Gene CPT Codes Copy CPT Code | Base Price | |
---|---|---|---|---|---|
7739 | MEFV | 81404 | 81404,81479 | $990 | Order Options and Pricing |
Pricing Comments
Testing run on PG-select capture probes includes CNV analysis for the gene(s) on the panel but does not permit the optional add on of exome-wide CNV analysis. Any of the NGS platforms allow reflex to other clinically relevant genes, up to whole exome or whole genome sequencing depending upon the base platform selected for the initial test.
An additional 25% charge will be applied to STAT orders. STAT orders are prioritized throughout the testing process.
This test is also offered via a custom panel (click here) on our exome or genome backbone which permits the optional add on of exome-wide CNV or genome-wide SV analysis.
Turnaround Time
3 weeks on average for standard orders or 2 weeks on average for STAT orders.
Please note: Once the testing process begins, an Estimated Report Date (ERD) range will be displayed in the portal. This is the most accurate prediction of when your report will be complete and may differ from the average TAT published on our website. About 85% of our tests will be reported within or before the ERD range. We will notify you of significant delays or holds which will impact the ERD. Learn more about turnaround times here.
Targeted Testing
For ordering sequencing of targeted known variants, go to our Targeted Variants page.
Clinical Features and Genetics
Clinical Features
Amyloidosis is characterized by abnormal deposition of insoluble beta-pleated sheet aggregates (amyloid) of specific plasma proteins, resulting in disruption of organ and tissue function. Deposition can be localized or systemic, be restricted to a single organ or involve multiple organs respectively, with the kidney most frequently affected. Clinically, the presence of proteinuria, renal insufficiency, heart failure, orthostatic hypertension, peripheral neuropathy or unexplained kidney, heart or systemic disease are suspicious for amyloidosis (Picken 2010). Presentation includes a spectrum of symptoms varying from asymptomatic to fatigue, extremity edema, angina or syncope, which is associated with more advanced disease (Leung et al. 2012).
Familial Mediterranean fever (FMF) comprises two phenotypes. Type 1 is characterized by recurrent short episodes of inflammation and serositis including fever, peritonitis, synovitis, pleuritis, and, rarely, pericarditis and meningitis. The symptoms and severity vary among affected individuals, sometimes even among members of the same family. Amyloidosis, which can lead to renal failure, is the most severe complication. Type 2 is characterized by amyloidosis as the first clinical manifestation of FMF in an otherwise asymptomatic individual. The prevalence of amyloidosis varies by ethnicity, genotype, and gender. In untreated individuals, amyloidosis can occur in 60% of individuals of Turkish heritage and in up to 75% of North African Jews (Shohat et al 1999). The age of onset of FMF attacks appears to be earlier in persons with amyloidosis than in those without amyloidosis. FMF-related manifestations of chest pain, arthritis, and erysipelas-like erythema are more common in those with amyloidosis. Diagnosis of FMF is suspected in individuals with recurrent episodes of fever associated with abdominal pain (peritonitis) and/or pleuritic pain and/or arthritis (ankle/knee) usually lasting two to three days. A high erythrocyte sedimentation rate (ESR), leukocytosis, and a high serum concentration of fibrinogen are characteristic (Shohat and Halpern 2012).
Genetics
Familial Mediterranean Fever is inherited in an autosomal recessive manner, caused by mutations in the MEFV gene, although recent studies have suggested that some carriers of single mutations manifest a spectrum of findings from classic FMF to mild FMF. Affected individuals may therefore have biallelic MEFV mutations or a heterozygous MEFV mutation in about 25% of cases (Moradian et al, 2010). Carrier rates for FMF mutations may be as high as 1:3 in some populations, suggesting that the disease is underdiagnosed. The MEFV gene codes for pyrin (also known as marenostrin), which is believed to assist in keeping the inflammation process under control. Pyrin is produced in certain white blood cells (neutrophils, eosinophils, and monocytes) that play a role in inflammation and in fighting infection. MEFV gene mutations lead to reduced amounts of pyrin or a malformed pyrin protein that cannot function properly.
About 80 mutations have been described so far in MEFV gene. The French FMF Consortium (1997) described the most commonly seen Met694Val mutation as the 'MED' variation because it was observed in affected individuals of various ethnic origins (Jewish, Armenian, Turkish, Arabian, non-Ashkanazi Jews) in the Mediterranean basin suggesting founder effect in the origin of a large fraction of FMF cases (El-Shanti et al. 2006). The penetrance of M694V homozygosity was very high (99%) and correlated with a severe disease course. The spectrum of MEFV mutations reported in FMF include missense, nonsense, splicing, regulatory and small deletions/duplications. Five frequent founder mutations accounted for the majority (74%) of mutations, whereas other mutations were found in no more than 1% of FMF chromosomes (Touitou 2001). No gross deletions or insertions have been reported so far (Human Gene Mutation Database). Mutations in MEFV may also be involved in Behçet's disease, Inflammatory bowel disease, Rheumatoid arthritis, Juvenile idiopathic arthritis, Ankylosing spondylitis, Palindromic rheumatism and Systemic lupus erythematosus (SLE) (Shohat and Halpern 2012).
Clinical Sensitivity - Sequencing with CNV PG-Select
MEFV is the only gene known to cause FMF. Five founder mutations, V726A, M694V, M694I, M680I and E148Q account for 74% of FMF chromosomes from typical cases (Armenians, Arabs, Jews, and Turks) whereas other mutations were found in no more than 1% of FMF chromosomes (Touitou 2001).
Testing Strategy
This test provides full coverage of all coding exons of the MEFV gene, plus ~10 bases of flanking noncoding DNA. We define full coverage as >20X NGS reads or Sanger sequencing.
Indications for Test
Molecular genetic testing is recommended in individuals with the following clinical manifestations suggesting the diagnosis of familial Mediterranean fever (FMF). The minimal (and most current) criteria for diagnosis of FMF are the Tel Hashomer clinical criteria (Pras 1998). They are: Fever plus EITHER One or more major signs (Fever, Abdominal pain, Chest pain, Joint pain or Skin eruption) and one minor sign OR Two minor signs (increased erythrocyte sedimentation rate, Leukocytosis, elevated serum concentration of fibrinogen). This test may also be considered for the reproductive partners of individuals who carry pathogenic variants in MEFV.
Molecular genetic testing is recommended in individuals with the following clinical manifestations suggesting the diagnosis of familial Mediterranean fever (FMF). The minimal (and most current) criteria for diagnosis of FMF are the Tel Hashomer clinical criteria (Pras 1998). They are: Fever plus EITHER One or more major signs (Fever, Abdominal pain, Chest pain, Joint pain or Skin eruption) and one minor sign OR Two minor signs (increased erythrocyte sedimentation rate, Leukocytosis, elevated serum concentration of fibrinogen). This test may also be considered for the reproductive partners of individuals who carry pathogenic variants in MEFV.
Gene
Official Gene Symbol | OMIM ID |
---|---|
MEFV | 608107 |
Inheritance | Abbreviation |
---|---|
Autosomal Dominant | AD |
Autosomal Recessive | AR |
X-Linked | XL |
Mitochondrial | MT |
Diseases
Name | Inheritance | OMIM ID |
---|---|---|
Familial Mediterranean Fever | AR | 249100 |
Familial Mediterranean Fever, Autosomal Dominant | AD | 134610 |
Related Tests
Name |
---|
Familial Hemophagocytic Lymphohistiocytosis (FHL) Panel |
Periodic Fever Syndromes Panel |
Citations
- Consortium IF. 1997. Ancient Missense Mutations in a New Member of the< i> RoRet Gene Family Are Likely to Cause Familial Mediterranean Fever. Cell 90: 797–807. PubMed ID: 9288758
- El-Shanti H, Majeed HA, El-Khateeb M. 2006. Familial mediterranean fever in Arabs. Lancet 367: 1016–1024. PubMed ID: 16564365
- Human Gene Mutation Database (Bio-base).
- Leung N, Nasr SH, Sethi S. 2012. How I treat amyloidosis: the importance of accurate diagnosis and amyloid typing. Blood 120: 3206–3213. PubMed ID: 22948045
- Moradian MM, Sarkisian T, Ajrapetyan H, Avanesian N. 2010. Genotype-phenotype studies in a large cohort of Armenian patients with familial Mediterranean fever suggest clinical disease with heterozygous MEFV mutations. J. Hum. Genet. 55: 389–393. PubMed ID: 20485448
- Picken MM. 2010. Amyloidosis-where are we now and where are we heading? Archives of pathology & laboratory medicine 134: 545–551. PubMed ID: 20367306
- Pras M. 1998. Familial Mediterranean fever: from the clinical syndrome to the cloning of the pyrin gene. Scand. J. Rheumatol. 27: 92–97. PubMed ID: 9572633
- Shohat M, Halpern GJ. 2012. Familial Mediterranean Fever. In: Pagon RA, Adam MP, Bird TD, Dolan CR, Fong C-T, and Stephens K, editors. GeneReviews™, Seattle (WA): University of Washington, Seattle. PubMed ID: 20301405
- Shohat M, Magal N, Shohat T, Chen X, Dagan T, Mimouni A, Danon Y, Lotan R, Ogur G, Sirin A. 1999. Phenotype–genotype correlation in familial Mediterranean fever: evidence for an association between Met694Val and amyloidosis. European Journal of Human Genetics 7: PubMed ID: 10234504
- Touitou I. 2001. The spectrum of Familial Mediterranean Fever (FMF) mutations. European Journal of Human Genetics 9: 473-483. PubMed ID: 11464238
Ordering/Specimens
Ordering Options
We offer several options when ordering sequencing tests. For more information on these options, see our Ordering Instructions page. To view available options, click on the Order Options button within the test description.
myPrevent - Online Ordering
- The test can be added to your online orders in the Summary and Pricing section.
- Once the test has been added log in to myPrevent to fill out an online requisition form.
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Requisition Form
- A completed requisition form must accompany all specimens.
- Billing information along with specimen and shipping instructions are within the requisition form.
- All testing must be ordered by a qualified healthcare provider.
For Requisition Forms, visit our Forms page
If ordering a Duo or Trio test, the proband and all comparator samples are required to initiate testing. If we do not receive all required samples for the test ordered within 21 days, we will convert the order to the most effective testing strategy with the samples available. Prior authorization and/or billing in place may be impacted by a change in test code.
Specimen Types
ORDER OPTIONS
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