Hereditary Paraganglioma-Pheochromocytoma (PGL/PCC) Syndrome Panel
Summary and Pricing
Test Method
Sequencing and CNV Detection via NextGen Sequencing using PG-Select Capture ProbesTest Code | Test Copy Genes | Panel CPT Code | Gene CPT Codes Copy CPT Code | Base Price | |
---|---|---|---|---|---|
1329 | Genes x (13) | 81479 | 81403(x1), 81404(x4), 81405(x4), 81406(x2), 81408(x1), 81479(x14) | $990 | Order Options and Pricing |
Pricing Comments
Testing run on PG-select capture probes includes CNV analysis for the gene(s) on the panel but does not permit the optional add on of exome-wide CNV analysis. Any of the NGS platforms allow reflex to other clinically relevant genes, up to whole exome or whole genome sequencing depending upon the base platform selected for the initial test.
An additional 25% charge will be applied to STAT orders. STAT orders are prioritized throughout the testing process.
This test is also offered via a custom panel (click here) on our exome or genome backbone which permits the optional add on of exome-wide CNV or genome-wide SV analysis.
Turnaround Time
3 weeks on average for standard orders or 2 weeks on average for STAT orders.
Please note: Once the testing process begins, an Estimated Report Date (ERD) range will be displayed in the portal. This is the most accurate prediction of when your report will be complete and may differ from the average TAT published on our website. About 85% of our tests will be reported within or before the ERD range. We will notify you of significant delays or holds which will impact the ERD. Learn more about turnaround times here.
Targeted Testing
For ordering sequencing of targeted known variants, go to our Targeted Variants page.
Clinical Features and Genetics
Clinical Features
Hereditary paraganglioma-pheochromocytoma (PGL/PCC) syndrome is a familial cancer syndrome that results in neuroendocrine tumors. The diagnosis of hereditary PGL/PCC syndrome is based on physical examination, family history, imaging studies, biochemical testing, and molecular genetic testing. Symptoms of PGL/PCC result either from mass effects or catecholamine hypersecretion (e.g., sustained or paroxysmal elevations in blood pressure, headache, episodic profuse sweating, palpitations, pallor, and apprehension or anxiety; Else et al. 2018. PubMed ID: 20301715).
Paraganglia are a group of neuroendocrine cells that originate from the embryonic neural crest and can secrete catecholamines. In PGL/PCC syndrome, paraganglia arise in either the paravertebral axis (base of the skull to the pelvis) for paragangliomas or the adrenal medulla for pheochromocytomas (Welander et al. 2011. PubMed ID: 22041710).
Sympathetic paragangliomas hypersecrete catecholamines, whereas parasympathetic paragangliomas are most often nonsecretory. Extra-adrenal parasympathetic paragangliomas are located predominantly in the head and neck. The sympathetic extra-adrenal paragangliomas are generally located in the thorax, abdomen, and pelvis and are usually secretory. Pheochromocytomas typically hypersecrete catecholamines (Else et al. 2018. PubMed ID: 20301715).
The prevalence of PGL/PCC tumors in the United States has been estimated to be between 1:2500 to 1:6000 (Chen et al. 2010. PubMed ID: 20664475) and for the hereditary PGL/PCC syndrome it has been estimated at 1:25,000 to 1:50,000 (Welander et al. 2011. PubMed ID: 22041710).
Genetics
Hereditary paraganglioma-pheochromocytoma syndrome is an autosomal dominant disorder and is mainly caused by pathogenic variants in three genes, (SDHD, SDHC, and SDHB), which are also known by their syndromic names PGL1, PGL3, and PGL4. The next most commonly mutated gene is SDHA (PGL5), which encodes a catalytic subunit of succinate-ubiquinone oxidoreductase. Hereditary PGL/PCC syndrome presents variable expressivity and age-related penetrance. The nuclear genes SDHA, SDHB, SDHC, and SDHD encode the four subunits of the mitochondrial enzyme succinate dehydrogenase (SDH). Another gene, SDHAF2 (also known as SDH5) encodes a protein that appears to be required for flavination of the SDHA subunit. Pathogenic variants in the MAX gene, which encodes a transcription factor that regulates cell proliferation, differentiation, and apoptosis, can also predispose individuals to PGL and PCC (Comino-Méndez et al. 2011; Burnichon et al. 2012).
Pathogenic variants in MAX, SDHD, and SDHAF2 demonstrate parent-of-origin effects and generally cause disease only when inherited from the father. A proband with a hereditary PGL/PCC syndrome may have inherited it from a parent or have a de novo variant, although the latter’s frequency is not known. An individual who maternally inherits a MAX, SDHD, or SDHAF2 pathogenic variant has a low risk of developing disease; however, each of the individual's offspring is at a 50% risk of inheriting the disease-causing allele. An individual who paternally inherits an MAX, SDHD, or SDHAF2 pathogenic variant is at high risk of manifesting PGL/PCC. Germline predisposing pathogenic variants have also been found in the gene TMEM127, which is a negative regulator of mechanistic target of rapamycin (mTORC1) and has an important role in cellular proliferation and cell death (Else et al. 2018. PubMed ID: 20301715).
Other genes causative for hereditary paraganglioma-pheochromocytoma syndrome include FH, NF1, VHL, RET, MEN1, and DLST. NF1 encodes for the protein neurofibromin, which is a tumor suppressor that activates GTPase and controls cellular proliferation (Friedman. 2019. PubMed ID: 20301288). The VHL gene is also a tumor suppressor. Inactivation of both alleles at the cellular level leads to abnormal activation of genes involved in hypoxia (Maher et al. 2011. PubMed ID: 21386872). The RET proto-oncogene is one of many receptor tyrosine kinases, cell-surface molecules that transduce signals for cell growth and differentiation via RET autophosphorylation and intracellular signaling (Santoro et al. 2004. PubMed ID: 15331579). MEN1 is a tumor suppressor gene involved in many vital processes, including transcriptional regulation, DNA replication, and DNA repair (Larsson et al. 1988. PubMed ID: 2894610; Lemos and Thakker. 2008. PubMed ID: 17879353). The FH gene is a tumor suppressor encoding fumurate hydratase, which is involved in the conversion of fumarate to L-malate in the tricarboxylic acid (Krebs) cycle (Maher. 2011. PubMed ID: 21071978; Sudarshan et al. 2007. PubMed ID: 17287871). The DLST gene encodes a component of the multi-enzyme complex 2-oxoglutarate dehydrogenase that is involved in the tricarboxylic acid (Krebs) cycle (Remacha et al. 2019. PubMed ID: 30929736; Buffet et al. 2021. PubMed ID: 33180916). In vivo experimental studies suggest that loss of DLST catalytic activity leads to a high alpha-KG/fumarate ratio and accumulation of the oncometabolite 2-hydroxyglutaric acid (2HG; Remacha et al. 2019. PubMed ID: 30929736).
See individual gene test descriptions for additional information on molecular biology of gene products.
Clinical Sensitivity - Sequencing with CNV PG-Select
Although the majority of hereditary paraganglioma-pheochromocytoma (PGL/PCC) syndrome tumors are sporadic (non-familial), approximately 13% of all PGL/PCC tumors are caused by germline pathogenic variants in known PGL/PCC syndrome genes (Welander et al. 2011. PubMed ID: 22041710). Clinical sensitivity is dependent on tumor location. For the SDHB gene, pathogenic variants are detectable in up to 44% of hereditary PGL/PCC cases; pathogenic variants in the SDHC gene are detectable in up to 8% of PGL/PCC hereditary cases; pathogenic variants in the SDHA gene are detectable in up to 3% of hereditary PGL/PCC cases; and pathogenic variants in the SDHD gene are detectable in up to 50% of hereditary PGL/PCC cases (Else et al. 2018. PubMed ID: 20301715). The clinical sensitivity for SDHAF2 and TMEM127 pathogenic variants is currently unknown. Germline pathogenic variants in the MAX gene have been estimated to be responsible for PCC/PGL in 1% of patients (Burnichon et al. 2012. PubMed ID: 22452945). In addition to the known PGL/PCC syndrome genes, germline pathogenic variants in a number of other genes may also predispose to PGL/PCC tumors (Opocher and Schiavi. 2010. PubMed ID: 21115163). PGL/PCC tumors can also be found in >10% of other familial syndromes such as multiple endocrine neoplasia type 2 (MEN2), von Hippel–Lindau disease (VHL), and neurofibromatosis type 1 (NF1); they are seen less often in Carney triad and Carney–Stratakis syndrome and rarely in multiple endocrine neoplasia type 1 (MEN1; Welander et al. 2011. PubMed ID: 22041710). The clinical sensitivity of DLST and FH pathogenic variants in predisposition to PGL/PCC is unknown, but pathogenic variants in both of these genes have been previously reported (Castro-Vega et al. 2014. PubMed ID: 24334767; Remacha et al. 2019. PubMed ID: 30929736; Buffet et al. 2021. PubMed ID: 33180916).
Hereditary paraganglioma-pheochromocytoma syndrome deletion and duplication frequencies for the majority of these genes are unknown; however, deletions have been reported in the SDHB gene in 12% of patients (Cascón et al. 2006. PubMed ID: 16258955) and have also been reported less frequently in the SDHC, SDHD, and MAX genes.
Testing Strategy
This test is performed using Next-Gen sequencing with additional Sanger sequencing as necessary.
This panel typically provides 99.9% coverage of all coding exons of the genes listed, plus ~10 bases of flanking noncoding DNA in all available transcripts along with other non-coding regions in which pathogenic variants have been identified at PreventionGenetics or reported elsewhere. We define coverage as ≥20X NGS reads or Sanger sequencing.
In addition to the regions described above, this testing includes coverage of the following variants that reside in deep intronic regions: PCCA c.1285-1416A>G and PCCB c.654+462A>G.
Of note, Next Generation Sequencing analysis of the SDHA gene is technically challenging due to the presence of segmental duplications and paralogy. Therefore, analysis of CNVs in this region is not included in this test.
Indications for Test
Individuals with a clinical or family history of hereditary PGL/PCC syndrome should be tested early. Early diagnosis may improve patient prognosis through regular screening and treatment for early-onset malignancies. Early detection through surveillance and removal of tumors may prevent or minimize complications related to mass effects, catecholamine hypersecretion, and malignant transformation.
Individuals with a clinical or family history of hereditary PGL/PCC syndrome should be tested early. Early diagnosis may improve patient prognosis through regular screening and treatment for early-onset malignancies. Early detection through surveillance and removal of tumors may prevent or minimize complications related to mass effects, catecholamine hypersecretion, and malignant transformation.
Genes
Official Gene Symbol | OMIM ID |
---|---|
DLST | 126063 |
FH | 136850 |
MAX | 154950 |
MEN1 | 613733 |
NF1 | 613113 |
RET | 164761 |
SDHA | 600857 |
SDHAF2 | 613019 |
SDHB | 185470 |
SDHC | 602413 |
SDHD | 602690 |
TMEM127 | 613403 |
VHL | 608537 |
Inheritance | Abbreviation |
---|---|
Autosomal Dominant | AD |
Autosomal Recessive | AR |
X-Linked | XL |
Mitochondrial | MT |
Diseases
Related Test
Name |
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PGxome® |
Citations
- Buffet et al. 2021. PubMed ID: 33180916
- Burnichon et al. 2012. PubMed ID: 22452945
- Cascón et al. 2006. PubMed ID: 16258955
- Castro-Vega et al. 2014. PubMed ID: 24334767
- Chen et al. 2010. PubMed ID: 20664475
- Comino-Méndez et al. 2011. PubMed ID: 21685915
- Else et al. 2018. Hereditary Paraganglioma-Pheochromocytoma Syndromes. In: Pagon RA, Adam MP, Bird TD, Dolan CR, Fong C-T, Smith RJ, and Stephens K, editors. GeneReviews™, Seattle (WA): University of Washington, Seattle. PubMed ID: 20301715
- Friedman. 2019. Neurofibromatosis 1. In: Pagon RA, Adam MP, Bird TD, Dolan CR, Fong C-T, and Stephens K, editors. GeneReviews™, Seattle (WA): University of Washington, Seattle. PubMed ID: 20301288
- Larsson et al. 1988. PubMed ID: 2894610
- Lemos and Thakker. 2008. PubMed ID: 17879353
- Maher et al. 2011. PubMed ID: 21386872
- Maher. 2011. PubMed ID: 21071978
- Opocher and Schiavi. 2010. PubMed ID: 21115163
- Remacha et al. 2019. PubMed ID: 30929736
- Santoro et al. 2004. PubMed ID: 15331579
- Sudarshan et al. 2007. PubMed ID: 17287871
- Welander et al. 2011. PubMed ID: 22041710
Ordering/Specimens
Ordering Options
We offer several options when ordering sequencing tests. For more information on these options, see our Ordering Instructions page. To view available options, click on the Order Options button within the test description.
myPrevent - Online Ordering
- The test can be added to your online orders in the Summary and Pricing section.
- Once the test has been added log in to myPrevent to fill out an online requisition form.
- PGnome sequencing panels can be ordered via the myPrevent portal only at this time.
Requisition Form
- A completed requisition form must accompany all specimens.
- Billing information along with specimen and shipping instructions are within the requisition form.
- All testing must be ordered by a qualified healthcare provider.
For Requisition Forms, visit our Forms page
If ordering a Duo or Trio test, the proband and all comparator samples are required to initiate testing. If we do not receive all required samples for the test ordered within 21 days, we will convert the order to the most effective testing strategy with the samples available. Prior authorization and/or billing in place may be impacted by a change in test code.
Specimen Types
ORDER OPTIONS
View Ordering Instructions1) Select Test Type
2) Select Additional Test Options
No Additional Test Options are available for this test.