RYR1-Related Congenital Myopathies via the RYR1 Gene
Summary and Pricing
Test Method
Exome Sequencing with CNV DetectionTest Code | Test Copy Genes | Test CPT Code | Gene CPT Codes Copy CPT Code | Base Price | |
---|---|---|---|---|---|
11631 | RYR1 | 81408 | 81408,81479 | $990 | Order Options and Pricing |
Pricing Comments
Our favored testing approach is exome based NextGen sequencing with CNV analysis. This will allow cost effective reflexing to PGxome or other exome based tests. However, if full gene Sanger sequencing is desired for STAT turnaround time, insurance, or other reasons, please see link below for Test Code, pricing, and turnaround time information. If the Sanger option is selected, CNV detection may be ordered through Test #600.
An additional 25% charge will be applied to STAT orders. STAT orders are prioritized throughout the testing process.
Click here for costs to reflex to whole PGxome (if original test is on PGxome Sequencing platform).
Click here for costs to reflex to whole PGnome (if original test is on PGnome Sequencing platform).
The Sanger Sequencing method for this test is NY State approved.
For Sanger Sequencing click here.Turnaround Time
3 weeks on average for standard orders or 2 weeks on average for STAT orders.
Please note: Once the testing process begins, an Estimated Report Date (ERD) range will be displayed in the portal. This is the most accurate prediction of when your report will be complete and may differ from the average TAT published on our website. About 85% of our tests will be reported within or before the ERD range. We will notify you of significant delays or holds which will impact the ERD. Learn more about turnaround times here.
Targeted Testing
For ordering sequencing of targeted known variants, go to our Targeted Variants page.
Clinical Features and Genetics
Clinical Features
Congenital myopathy refers to a group of neuromuscular disorders that most often present in childhood and have characteristic histopathological features in skeletal muscle. Based on histopathology, the three main types of congenital myopathy are core myopathy, centronuclear myopathy, and nemaline rod myopathy. Pathological RYR1 gene variants are causative for core myopathy, centronuclear myopathy, and core/rod myopathy. Cores are areas of the muscle that abnormally lack oxidative and glycolytic enzymatic activity. These areas of clearing reflect an absence of mitochondria in the muscle. Cores are further classified as central cores, which run the length of the muscle cell, or minicores, which are wider than they are long. Nemaline rods are rod-shaped structures in the sarcoplasm that contain material from the degenerated Z-disk.
Central core disease (CCD) is a static or slowly progressive myopathy that demonstrates a wide range of clinical severity and age of onset, but uniform histopathology. In the newborn period, CCD results in a floppy infant with feeding difficulties, respiratory insufficiency, myopathic facies, and extraocular muscle weakness. Skeletal abnormalities include talipes equinovarus and congenital dislocation of the hips. Childhood-onset CCD presents with mild proximal weakness involving hip and axial muscles and delayed motor development. Skeletal findings such as scoliosis and equinovarus are other complications (Jungbluth et al. 2007). Cases of adult-onset CCD with generally milder clinical symptoms have been described (Duarte et al. 2011). One representative patient had normal arm and leg strength and normal muscle bulk, but was easily fatigued and had difficulty maintaining an upright posture (Jungbluth et al. 2009). Intrafamilial variability of disease severity and pathology is also known (Sewry et al. 2002). Imaging of muscle groups in CCD patients reveals a distinct pattern of involvement (Fischer et al. 2006). The most severely affected muscles are gluteus maximus, medial and anterior compartments of the thigh muscles, and soleus and lateral gastrocnemius muscles of the lower leg.
The other congenital myopathies associated with the RYR1 gene demonstrate a much broader spectrum of histopathology and diagnostic imaging patterns than does CCD (Wilmshurst et al. 2010; Klein et al. 2011; Mercuri, E. et al. 2010). Associated histopathological findings include multiminicores, centrally placed nuclei, and congenital fiber type disproportion.
RYR1-related minicore myopathy is also known as multiminicore myopathy with external ophthalmoplegia because involvement of extraocular muscles is a nearly universal finding (Jungbluth et al. 2000; Monnier et al. 2009). Clinical signs include severe neonatal hypotonia, respiratory problems, feeding difficulties, frequent respiratory infections, delayed motor development, scoliosis, kyphoscoliosis, contractures, and myopathic facies (Wilmshurst et al. 2010).
RYR1-related centronuclear myopathy is associated with infantile-onset proximal weakness, external ophthalmoplegia, and bulbar involvement, followed by progressive improvement of symptoms. Histopathological findings in muscle biopsied from young patients include internalized nuclei and type 1 fiber predominance. However, when biopsied later in life, two-thirds of patients in one study had central cores or minicores in their muscle (Wilmshurst et al. 2010).
Congenital fiber type disproportion is a genetically heterogeneous disorder defined as hypotrophy of type 1 fibers compared to type 2 fibers. Patients with RYR1-related CFTD exhibit generalized hypotonia, motor delays, recurrent respiratory infections, a weak cry, ptosis, ophthalmoplegia, facial weakness, scoliosis, and contractures (Clarke et al. 2010).
The clinically most severe cases of RYR1-related myopathy present with decreased fetal movement, hypotonia, poor feeding, respiratory involvement, arthrogryposis, and ophthalmoplegia (Bharucha-Goebel et al. 2013). Additional features include fractures or hip dislocation at birth. In the published cohort of patients, the severe neonatal onset cases with dominant acting RYR1 mutations had classic central cores on muscle biopsy, while those with recessive acting RYR1 mutations had notable histologic variability, including fibrosis, variation in fiber size, and nuclear internalization.RYR1 is also involved in exercise-induced rhabdomyolysis and myalgia (Dlamini et al. 2013). Many of the RYR1 mutations identified in these patients are documented to be associated with malignant hyperthermia risk. Patients that span a broad range of ages presenting with symptoms of exercise or heat-induced rhabdomyolysis and sometimes myalgia have been reported (Dlamini et al. 2013).
Malignant hyperthermia susceptibility is another well documented RYR1 disorder.
Genetics
The RYR1 gene encodes the skeletal muscle isoform of the ryanodine receptor. The RYR1 protein functions to regulate calcium release at the sarcoplasmic reticulum by serving as the calcium-induced, voltage-gated receptor, as well as the channel through which calcium flows. RYR1-related congenital myopathies are inherited as autosomal dominant and recessive disorders. Central core disease is typically dominant, with de novo and inherited mutations being well documented (Klein et al. 2012). The vast majority of CCD-causing mutations result in amino acid substitutions that lie in the C-terminus of the RYR1 protein (Zhou et al. 2007). The other RYR1-related congenital myopathies are most often inherited as autosomal recessive disorders, although exceptions exist. Recessive RYR1 myopathy cases are typically found to have one null allele and a second variant that results in an amino acid substitution or, as in the most severe neonatal forms, a second null allele (Bevilacqua et al. 2011; Monnier et al. 2008).
Clinical Sensitivity - Sequencing with CNV PGxome
In a study to address the prevalence of congenital myopathy in a U.S. pediatric population, Amburgey et al. (2011) found RYR1 to be the most common overall cause. Thirteen of 46 cases were found to have RYR1 mutations for an estimated prevalence of 1:90,000. Similarly, RYR1 was found to be responsible for 26 of 44 congenital myopathy cases in a European cohort (Maggi et al. 2013). Clinical sensitivity is reported to be in excess of 90% in cases of CCD (Wu et al. 2006), and RYR1 mutations have been shown to be one of the most common causes of CFTD (Clarke et al. 2010). In a clinically and histologically well defined cohort of multiminicore patients, three of five families were found to have RYR1 mutations (Jungbluth et al. 2005). Analytical sensitivity is high with Next-Generation sequencing or Sanger sequencing because most RYR1 causative mutations are detectable by these methods.
Clinical sensitivity for gross deletion/duplication testing is likely low because, to date, only one gross deletion has been reported (Monnier et al. 2008).
Testing Strategy
This test provides full coverage of all coding exons of the RYR1 gene plus 10 bases of flanking noncoding DNA in all available transcripts along with other non-coding regions in which pathogenic variants have been identified at PreventionGenetics or reported elsewhere. We define full coverage as >20X NGS reads or Sanger sequencing. PGnome panels typically provide slightly increased coverage over the PGxome equivalent. PGnome sequencing panels have the added benefit of additional analysis and reporting of deep intronic regions (where applicable).
Dependent on the sequencing backbone selected for this testing, discounted reflex testing to any other similar backbone-based test is available (i.e., PGxome panel to whole PGxome; PGnome panel to whole PGnome).
Indications for Test
Patients that display clinical and histopathological features of the RYR1-related myopathies. This test may also be considered for the reproductive partners of individuals who carry pathogenic variants in RYR1.
Patients that display clinical and histopathological features of the RYR1-related myopathies. This test may also be considered for the reproductive partners of individuals who carry pathogenic variants in RYR1.
Gene
Official Gene Symbol | OMIM ID |
---|---|
RYR1 | 180901 |
Inheritance | Abbreviation |
---|---|
Autosomal Dominant | AD |
Autosomal Recessive | AR |
X-Linked | XL |
Mitochondrial | MT |
Diseases
Name | Inheritance | OMIM ID |
---|---|---|
Central Core Disease | AR, AD | 117000 |
Minicore Myopathy With External Ophthalmoplegia | AR | 255320 |
Citations
- Amburgey K, McNamara N, Bennett LR, McCormick ME, Acsadi G, Dowling JJ. 2011. Prevalence of congenital myopathies in a representative pediatric united states population. Annals of neurology 70: 662–665. PubMed ID: 22028225
- Bevilacqua JA, Monnier N, Bitoun M, Eymard B, Ferreiro A, Monges S, Lubieniecki F, Taratuto AL, Laquerrière A, Claeys KG, Marty I, Fardeau M, et al. 2011. Recessive RYR1 mutations cause unusual congenital myopathy with prominent nuclear internalization and large areas of myofibrillar disorganization. Neuropathol. Appl. Neurobiol. 37: 271–284. PubMed ID: 21062345
- Bharucha-Goebel DX, Santi M, Medne L, Zukosky K, Dastgir J, Shieh PB, Winder T, Tennekoon G, Finkel RS, Dowling JJ, Monnier N, Bonnemann CG. 2013. Severe congenital RYR1-associated myopathy: The expanding clinicopathologic and genetic spectrum. Neurology 80: 1584–1589. PubMed ID: 23553484
- Clarke NF, Waddell LB, Cooper ST, Perry M, Smith RLL, Kornberg AJ, Muntoni F, Lillis S, Straub V, Bushby K, Guglieri M, King MD, et al. 2010. Recessive mutations in RYR1 are a common cause of congenital fiber type disproportion. Human Mutation 31: E1544–E1550. PubMed ID: 20583297
- Dlamini N, Voermans NC, Lillis S, Stewart K, Kamsteeg E-J, Drost G, Quinlivan R, Snoeck M, Norwood F, Radunovic A, Straub V, Roberts M, et al. 2013. Mutations in RYR1 are a common cause of exertional myalgia and rhabdomyolysis. Neuromuscular Disorders 23: 540–548. PubMed ID: 23628358
- Duarte ST, Oliveira J, Santos R, Pereira P, Barroso C, Conceição I, Evangelista T. 2011. Dominant and recessive RYR1 mutations in adults with core lesions and mild muscle symptoms. Muscle & nerve 44: 102–108. PubMed ID: 21674524
- Fischer D, Herasse M, Ferreiro A, Barragan-Campos HM, Chiras J, Viollet L, Maugenre S, Leroy J-P, Monnier N, Lunardi J, Guicheney P, Fardeau M, et al. 2006. Muscle imaging in dominant core myopathies linked or unlinked to the ryanodine receptor 1 gene. Neurology 67: 2217–2220. PubMed ID: 17190947
- Jungbluth H, Lillis S, Zhou H, Abbs S, Sewry C, Swash M, Muntoni F. 2009. Late-onset axial myopathy with cores due to a novel heterozygous dominant mutation in the skeletal muscle ryanodine receptor (RYR1) gene. Neuromuscular Disorders 19: 344–347. PubMed ID: 19303294
- Jungbluth H, Sewry C, Brown SC, Manzur AY, Mercuri E, Bushby K, Rowe P, Johnson MA, Hughes I, Kelsey A, Dubowitz V, Muntoni F. 2000. Minicore myopathy in children: a clinical and histopathological study of 19 cases. Neuromuscul. Disord. 10: 264–273. PubMed ID: 10838253
- Jungbluth H, Zhou H, Hartley L, Halliger-Keller B, Messina S, Longman C, Brockington M, Robb SA, Straub V, Voit T, Swash M, Ferreiro A, et al. 2005. Minicore myopathy with ophthalmoplegia caused by mutations in the ryanodine receptor type 1 gene. Neurology 65: 1930–1935. PubMed ID: 16380615
- Jungbluth H, Zhou H, Sewry CA, Robb S, Treves S, Bitoun M, Guicheney P, Buj-Bello A, Bönnemann C, Muntoni F. 2007. Centronuclear myopathy due to a de novo dominant mutation in the skeletal muscle ryanodine receptor (RYR1) gene. Neuromuscul. Disord. 17: 338–345. PubMed ID: 17376685
- Klein A, Jungbluth H, Clement E, Lillis S, Abbs S, Munot P, Pane M, Wraige E, Schara U, Straub V, Mercuri E, Muntoni F. 2011. Muscle magnetic resonance imaging in congenital myopathies due to ryanodine receptor type 1 gene mutations. Arch. Neurol. 68: 1171–1179. PubMed ID: 21911697
- Klein A, Lillis S, Munteanu I, Scoto M, Zhou H, Quinlivan R, Straub V, Manzur AY, Roper H, Jeannet P-Y, Rakowicz W, Jones DH, et al. 2012. Clinical and genetic findings in a large cohort of patients with ryanodine receptor 1 gene-associated myopathies. Hum. Mutat. 33: 981–988. PubMed ID: 22473935
- Maggi L, Scoto M, Cirak S, Robb SA, Klein A, Lillis S, Cullup T, Feng L, Manzur AY, Sewry CA, Abbs S, Jungbluth H, et al. 2013. Congenital myopathies – Clinical features and frequency of individual subtypes diagnosed over a 5-year period in the United Kingdom. Neuromuscular Disorders 23: 195–205. PubMed ID: 23394784
- Mercuri E, Clements E, Offiah A, Pichiecchio A, Vasco G, Bianco F, Berardinelli A, Manzur A, Pane M, Messina S, Gualandi F, Ricci E, et al. 2010. Muscle magnetic resonance imaging involvement in muscular dystrophies with rigidity of the spine. Annals of Neurology 67: 201–208. PubMed ID: 20225280
- Monnier N, Laquerrière A, Marret S, Goldenberg A, Marty I, Nivoche Y, Lunardi J. 2009. First genomic rearrangement of the RYR1 gene associated with an atypical presentation of lethal neonatal hypotonia. Neuromuscul. Disord. 19: 680–684. PubMed ID: 19734047
- Monnier N, Marty I, Faure J, Castiglioni C, Desnuelle C, Sacconi S, Estournet B, Ferreiro A, Romero N, Laquerriere A, Lazaro L, Martin J-J, et al. 2008. Null mutations causing depletion of the type 1 ryanodine receptor (RYR1) are commonly associated with recessive structural congenital myopathies with cores. Hum. Mutat. 29: 670–678. PubMed ID: 18253926
- Sewry CA, Müller C, Davis M, Dwyer JSM, Dove J, Evans G, Schröder R, Fürst D, Helliwell T, Laing N. 2002. The spectrum of pathology in central core disease. Neuromuscular Disorders 12: 930–938. PubMed ID: 12467748
- Wilmshurst JM, Lillis S, Zhou H, Pillay K, Henderson H, Kress W, Müller CR, Ndondo A, Cloke V, Cullup T, Bertini E, Boennemann C, et al. 2010. RYR1 mutations are a common cause of congenital myopathies with central nuclei. Ann. Neurol. 68: 717–726. PubMed ID: 20839240
- Wu S, Ibarra M CA, Malicdan MCV, Murayama K, Yasuko Ichihara Y, Kikuchi H, Nonaka I, Noguchi S, Hayashi YK, Nishino I. 2006. Central core disease is due to RYR1 mutations in more than 90% of patients. Brain 129: 1470–1480. PubMed ID: 16621918
- Zhou H, Jungbluth H, Sewry CA, Feng L, Bertini E, Bushby K, Straub V, Roper H, Rose MR, Brockington M, Kinali M, Manzur A, et al. 2007. Molecular mechanisms and phenotypic variation in RYR1-related congenital myopathies. Brain 130: 2024–2036. PubMed ID: 17483490
Ordering/Specimens
Ordering Options
We offer several options when ordering sequencing tests. For more information on these options, see our Ordering Instructions page. To view available options, click on the Order Options button within the test description.
myPrevent - Online Ordering
- The test can be added to your online orders in the Summary and Pricing section.
- Once the test has been added log in to myPrevent to fill out an online requisition form.
- PGnome sequencing panels can be ordered via the myPrevent portal only at this time.
Requisition Form
- A completed requisition form must accompany all specimens.
- Billing information along with specimen and shipping instructions are within the requisition form.
- All testing must be ordered by a qualified healthcare provider.
For Requisition Forms, visit our Forms page
If ordering a Duo or Trio test, the proband and all comparator samples are required to initiate testing. If we do not receive all required samples for the test ordered within 21 days, we will convert the order to the most effective testing strategy with the samples available. Prior authorization and/or billing in place may be impacted by a change in test code.
Specimen Types
Specimen Requirements and Shipping Details
PGxome (Exome) Sequencing Panel
PGnome (Genome) Sequencing Panel
ORDER OPTIONS
View Ordering Instructions1) Select Test Type
2) Select Additional Test Options
No Additional Test Options are available for this test.